# ExoHub

> ExoHub: Distributed Data Management Using Git-Based Principles

This file follows the [llms.txt](https://llmstxt.org/) convention and covers the exo CLI user guide (v0.124.0), published here as per-page Markdown for LLMs and other automated tools.

## User Guide

- [Introduction](https://genentech.github.io/exohub/docs/user-guide/introduction/index.md): What is ExoHub and how does it work
- [Installation & Setup](https://genentech.github.io/exohub/docs/user-guide/installation/index.md): Install the exo CLI and configure authentication
- [Managing Credentials](https://genentech.github.io/exohub/docs/user-guide/credentials/index.md): Store and manage SSH keys and git tokens with ExoSafe
- [Working with Repositories](https://genentech.github.io/exohub/docs/user-guide/repositories/index.md): Clone, initialize, and explore dataset repositories
- [Permissions & Access Control](https://genentech.github.io/exohub/docs/user-guide/permissions/index.md): Manage who can read and write data using S3 Access Grants
- [Syncing Data](https://genentech.github.io/exohub/docs/user-guide/syncing/index.md): Download, upload, and export your data
- [Versioning & Collaboration](https://genentech.github.io/exohub/docs/user-guide/versioning/index.md): Git workflows for data teams
- [Provenance](https://genentech.github.io/exohub/docs/user-guide/provenance/index.md): Record and inspect the lineage of files with exo provenance
- [Running Jobs at Scale](https://genentech.github.io/exohub/docs/user-guide/jobs-at-scale/index.md): Manifests, job submission, and monitoring
- [Advanced Operations](https://genentech.github.io/exohub/docs/user-guide/advanced/index.md): Copying, mirroring, and linking
- [Google Drive Remote](https://genentech.github.io/exohub/docs/user-guide/drive-remote/index.md): Export annexed files to Google Drive for collaborators using Google Workspace
- [Atlas & Downloads](https://genentech.github.io/exohub/docs/user-guide/atlas-downloads/index.md): Browse the catalog and download artifacts
- [Themes & Appearance](https://genentech.github.io/exohub/docs/user-guide/themes/index.md): Customize terminal colors and dark/light mode
- [Troubleshooting](https://genentech.github.io/exohub/docs/user-guide/troubleshooting/index.md): Diagnosing and fixing issues
- [MCP Server](https://genentech.github.io/exohub/docs/user-guide/mcp-server/index.md): Use AI agents to manage your data through the Model Context Protocol
- [Local Standalone Catalog](https://genentech.github.io/exohub/docs/user-guide/standalone/index.md): Run a local ArtifactDB catalog stack with exo standalone
- [Environment Variables](https://genentech.github.io/exohub/docs/user-guide/environment-variables/index.md): All environment variables supported by the exo CLI