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Combined COO function

coo_rnaseq.Rd

wrapper for running coo_normalize and coo_predict together

Usage

coo_rnaseq(cds)

Arguments

cds

  • a DESeqDataSet object, with raw counts in the "counts" slot.

Value

a data frame of COO predictions. See coo_predict for more details

Details

This function is a wrapper for the two core COO prediction functions. This function intentionally forces a standard procedure for both normalization and modeling, as this should give us the best chance of the model matching up with our training data.