Filter experiment by frequency

Helper function for experiments filtering

filterExperimentByFrequency(
  experiment,
  carrier_frequency = FALSE,
  lower_frequency_cutoff = NULL,
  upper_frequency_cutoff = NULL
)

# S3 method for matrix
filterExperimentByFrequency(
  experiment,
  carrier_frequency = FALSE,
  lower_frequency_cutoff = NULL,
  upper_frequency_cutoff = NULL
)

# S3 method for SummarizedExperiment
filterExperimentByFrequency(
  experiment,
  carrier_frequency = FALSE,
  lower_frequency_cutoff = NULL,
  upper_frequency_cutoff = NULL
)

Arguments

experiment

Matrix or SummarizedExperiment object.

carrier_frequency

Logical flag indicating if carrier frequency should be returned.

lower_frequency_cutoff

Positive number or NULL. Numbers greater than 1 are interpreted as number of feature occurrences, numbers between 0 and 1 as fractions.

upper_frequency_cutoff

Positive number or NULL. Numbers greater than 1 are interpreted as number of feature occurrences, numbers between 0 and 1 as fractions.

Value

Filtered experiment matrix.