Prepare MiDAS data on HLA amino acid level — prepareMiDAS_hla_aa • midasHLA

Prepare MiDAS data on HLA amino acid level

prepareMiDAS_hla_aa(hla_calls, indels = TRUE, unkchar = FALSE, ...)

Arguments

hla_calls: HLA calls data frame, as returned by readHlaCalls function.
indels: Logical indicating whether indels should be considered when checking variability.
unkchar: Logical indicating whether unknown characters in the alignment should be considered when checking variability.
...: Not used

Value

SummarizedExperiment