Prepare MiDAS data on HLA divergence level — prepareMiDAS_hla_divergence • midasHLA

Prepare MiDAS data on HLA divergence level

prepareMiDAS_hla_divergence(
  hla_calls,
  hla_divergence_aa_selection = "binding_groove",
  ...
)

Arguments

hla_calls: HLA calls data frame, as returned by readHlaCalls function.
hla_divergence_aa_selection: String specifying variable region in peptide binding groove which should be considered for Grantham distance calculation. Valid choices includes: "binding_groove", "B_pocket", "F_pocket". See details for more information.
...: Not used

Value

Matrix