decima.plot package

Submodules

decima.plot.visualize module

decima.plot.visualize.plot_gene_scatter(ad, gene, show_corr=True, show_abline=False, size=0.1, alpha=0.5, figure_size=(3, 2.5), corr_col='pearson', corrx=None, corry=None)

decima.plot.visualize.plot_marker_box(gene, ad, marker_features, label_name='label', split_col=None, split_values=None, order=None, include_preds=True, fill=True)

decima.plot.visualize.plot_peaks(attrs, tss_pos, df_peaks=None, overlapping_min_dist=1000, figsize=(10, 2))

Plot peaks in attribution scores.

Parameters:

• attr – Attribution scores array

• tss_pos – Position of TSS (relative to the gene)

• df_peaks – DataFrame containing peak information

• overlapping_min_dist – Minimum distance between peaks to consider them overlapping

• figsize – Figure size

Returns:

The plotted figure

Return type:

plotnine.ggplot

decima.plot.visualize.plot_track_scatter(ad, track, off_track=None, show_corr=True, show_abline=False, size=0.1, alpha=0.5, figure_size=(3, 2.5), corrx=None, corry=None)

Module contents