decima.tools package

Submodules

decima.tools.evaluate module

decima.tools.evaluate.compare_marker_zscores(ad, key='cell_type')

decima.tools.evaluate.compute_marker_metrics(marker_df, key='cell_type', tp_cutoff=1)

decima.tools.evaluate.marker_zscores(ad, key='cell_type', layer=None)

decima.tools.evaluate.match_criteria(df, filter_df)

decima.tools.interpret module

decima.tools.interpret.find_attr_peaks(attr, tss_pos=None, n=5, min_dist=6)

decima.tools.interpret.scan_attributions(seq, attr, motifs, peaks, names=None, pthresh=0.001, rc=True, window=18)

Module contents